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► The RNALogo of RF00168 family:
 


See detail values
See the detail description of RF00168 in Rfam
 

► The SequenceLogo of RF00168 family:

► Reset display of RNALogo of RF00168 family:
 Family sequences selection : Seed ( 43 seqs.) Full ( 112 seqs.)
 Output image format :  
 Output image size :   x pixel

 


► The sequences in RF00168 family:
# STOCKHOLM 1.0

#=GF AC   RF00168
#=GF ID   Lysine
#=GF DE   Lysine riboswitch
#=GF AU   Wickiser JK, Barrick JE, Breaker RR
#=GF SE   Wickiser JK, Barrick JE
#=GF SS   Published; PMID:12787499
#=GF GA   56.00
#=GF TC   56.61
#=GF NC   55.62
#=GF TP   Cis-reg; riboswitch;
#=GF BM   cmbuild CM SEED
#=GF BM   cmsearch -W 300 CM SEQDB
#=GF RN   [1]
#=GF RM   12787499
#=GF RT   Riboswitches Control Fundamental Biochemical Pathways in Bacillus
#=GF RT   subtilis and Other Bacteria.
#=GF RA   Mandal M, Boese B, Barrick JE, Winkler WC, Breaker RR;
#=GF RL   Cell 2003;113:577-586.
#=GF RN   [2]
#=GF RM   14523230
#=GF RT   The L box regulon: Lysine sensing by leader RNAs of bacterial lysine
#=GF RT   biosynthesis genes.
#=GF RA   Grundy FJ, Lehman SC, Henkin TM;
#=GF RL   Proc Natl Acad Sci U S A 2003;100:12057-12062.
#=GF RN   [3]
#=GF RM   14597663
#=GF RT   An mRNA structure in bacteria that controls gene expression by
#=GF RT   binding lysine.
#=GF RA   Sudarsan N, Wickiser JK, Nakamura S, Ebert MS, Breaker RR;
#=GF RL   Genes Dev 2003;17:2688-2697.
#=GF RN   [4]
#=GF RM   14627808
#=GF RT   Regulation of lysine biosynthesis and transport genes in bacteria:
#=GF RT   yet another RNA riboswitch?.
#=GF RA   Rodionov DA, Vitreschak AG, Mironov AA, Gelfand MS;
#=GF RL   Nucleic Acids Res 2003;31:6748-6757.
#=GF CC   Riboswitches are metabolite binding domains within certain messenger
#=GF CC   RNAs that serve as precision sensors for their corresponding targets.
#=GF CC   Allosteric rearrangement of mRNA structure is mediated by ligand
#=GF CC   binding, and this results in modulation of gene expression. This
#=GF CC   family includes riboswitches that sense lysine [1] in a number of
#=GF CC   genes involved in lysine metabolism, including lysC [3].
#=GF SQ   43

M93419.1/332-511                     AGUGAAGAUAGAGGU.GCGAACUUC.AUCA..GUA..AAAGCUUGGAGAA
J03294.1/2297-2476                   GGUGAAGAUAGAGGU.GCGAACUUC.AAGA..GUA..UGCCUUUGGAGA.
Z99121.2/6040-5861                   CAGUGAGGUAGAGGUUGCGCGGAUG.AUGA..GUC..ACACAUGCUA...
AE017026.1/274819-274638             CGGUGAGGUAGAGGUUGCAGUCAUU.AAGA..GUA..UCAUUUCUGGA..
AE017007.1/287994-288186             CGAUGAGGUAGAGGUUGCGACUUUU.AAGA..GUA..CGACGGAC.....
AE017033.1/217118-217310             CGAUGAGGUAGAGGUUGCGACUUUU.AAGA..GUA..AAACGGAC.....
AE017029.1/246029-245843             ACGUGAGAUAGAGGUUGCGAUACUU.AUGA..GUA..UUCUAAUGGAGAC
AE017028.1/200117-200298             CUCAAAGGUAGAGGCCGCGAUAGGA.AAGA..GUA..AGCUAUGGG....
AE017003.1/180245-180059             ACGUGAGAUAGAGGUUGCGAUACUU.AUGA..GUA..UUCUAAUGGAGAC
AE017000.1/234265-234084             CGGUGAGGUAGAGGUUGCAAUCAUU.AAGA..GUA..UCAUUUCAGGA..
AE017269.1/77627-77808               CUCAAAGGUAGAGGCCGCGAUAGGA.AAGA..GUA..AGCUAUGGG....
AE017270.1/85304-85118               ACGUGAGAUAGAGGUUGCGAUACUU.AUGA..GUA..UUCUAAUGGAGAC
AE017267.1/95018-94836               CGGUGAGGUAGAGGUUGCAGUCAUU.AAGA..GUA..UCAUUUCAGGA..
AE017274.1/20257-20449               CGAUGAGGUAGAGGUUGCGACUUUU.AAUA..GUA..AAACGGAC.....
AL591976.1/186683-186486             UGGUGAGGUAGAGGUUGCGAGAUGC.ACUA..GUA..AUUUUUUCGAGGC
AL596166.1/112469-112272             UGGUGAGGUAGAGGUUGCGAGAUGC.ACUA..GUA..AUUUUUUCGAGGC
AF306669.1/1019-1194                 AUAUUUUGAUGAGGC.GCAUCAAUC.AUGA..GUA..AAGUUUAGAUUAC
AF269536.1/680-500                   AAUAGAGUUAGAGGUUGCAUUAUUA.AUGA..CUA..ACUUAUCAGAAGU
AF270308.1/2156-2331                 AAUAGAGUUAGAGGUUGCAUUAUUA.AUGA..CUA..ACUUAUCAGAAGU
AE016747.1/182196-182375             AGAUUUUGAUGAGGC.GCAUCAAUC.AUGA..GUA..AACUUUAGAUAAU
AE007576.1/1562-1747                 ACCUUUUGUAGAGGU.GCUUUAAGUCAAGA..GUA..ACCGUUUGG....
AE007856.1/5090-5262                 ACCUAGGGUAAAGGU.GCUGUAGUU.AUUA..UUA..UUUAUUCUU....
AE015937.1/285886-286061             UAGAAAGGUAGAGGC.GCGGUAUUU.AAUA..GUA..UCUGUACA.....
AE007843.1/1920-1745                 AACUGAGGUAGAGGC.GCAAAAUUU.AAGA..GUA..GAACUGUG.....
AE015944.1/195870-195703             ACCCAGGGUAGAGGA.GCUAUAAUU.AAGA..GUA..CUUAUCUU.....
AE013039.1/9145-9323                 CGCAUAAAUAGAGGA.GCUGCCAAGCAU....GUA..UUUGGCGAGGUGU
AE013149.1/9167-9356                 AGGUGAGGUAGAGGC.GCGGGUCAUCAAGA..GUA..ACAUGCCAGAGG.
AE016947.1/224792-224618             AAAAGAGGUAGAGGUCGCGGUUUUU.A.....UUA..CGCUUGUGG....
AL935254.1/261916-262097             AUCGAAAGAAGAGGAUGCGGUUAAC.AAUA..GUA..GCCGGCUGGAAGU
AE006448.1/6071-6253                 CACAUCGAUAGAGGUCGCAACUGAU.AUGAAUCUACGCCGAGUUGG....
AE015545.1/1265-1436                 CCUUUAAGUAGAGGC.GCGCUGCCU.AUGA..CUA..CUUGUGCGG....
AE015829.1/4454-4280                 AGGAACAGAAGAGGA.GCGUUAACU.A..G..GUA..GUCAAUCAGAGGA
U00006.1/98763-98567                 CAGGCCAGAAGAGGC.GCGUUGCCC.A..A..GUAA.CGGUGUUGGA...
X00008.1/296-492                     CAGGCCAGAAGAGGC.GCGUUGCCC.A..A..GUAA.CGGUGUUGGA...
X15196.1/270-75                      GCAGCCAGAAGAGGC.GCGUUGCCA.A.....GUAA.CGGUGUUGGA...
AE016770.1/235405-235209             CAGGCCAGAAGAGGC.GCGUUGCCC.A..A..GUAA.CGGUGUUGGA...
U32832.1/9495-9319                   UACAAAAGUAGAGGC.GCAAUUAUU.AUAA..GUA..UUUUUUCA.....
AE017154.1/86844-87014               ACAAAUUGUAGAGGU.GCAAAUCCG.AUAA..GUA..UUUCUUCU.....
AE006126.1/222-48                    UACUUGUGUAGAGGA.GCGAUCACU.AUAA..GUA..UUUUUUCU.....
AE004193.1/5679-5861                 UUUCGCCGUAGAGGA.GCGGUUACG.AAAA..GUA..UCCACAGUU....
AE004361.1/7554-7382                 CCUUUAAGUAGAGGC.GCGCUGUUC.AUGA..GUC..GCCAGUCGU....
AE004127.1/7715-7538                 UCUAGCAGAAGAGGA.GCACUGCCC.A..G..GCA..GAUGUUUUGUGGA
AE001799.1/20444-20268               .GACCCGACGGAGGC.GCGCCCGAG.AUGA..GUA..GGCUGUCCC....
#=GC SS_cons                         .....<<<<<<.....<<<<<<<<<............<<<<<<<<.....

M93419.1/332-511                     ......GAAUGAGCUUC.AAUG......AAAAGCUUU.GAAAGG.GAACG
J03294.1/2297-2476                   ......AAGAUGGAUUC.UGUG......AAAAAGGCU.GAAAGG.GGA.G
Z99121.2/6040-5861                   ......GGCUGACAGGG.GCUGUUA...AACAUGUGU.AAAAGG.CAU.C
AE017026.1/274819-274638             ......GAUGUAGUGGC.AUUGAUG...AAGGAAUGA.GAAAGG.AAU.G
AE017007.1/287994-288186             ......GAGACACAGAG.AAUGUCACCGACUCCGUUU.GAAAGG.AAA.A
AE017033.1/217118-217310             ......GAGAUACAGAG.AAUGUCUAAGACUCCGUUU.GAAAGG.AAA.A
AE017029.1/246029-245843             ......ACAGAGAGGUC.CAUG......AAAUUAGAU.GAAAGG.AAG.U
AE017028.1/200117-200298             ......AGAUUUAAUGG.AAUCUGUG..AUCAUAGGUUGAAAGG.GAC.U
AE017003.1/180245-180059             ......ACAGAGAUGUC.UAUG......AACUUAGAU.GAAAGG.AAG.U
AE017000.1/234265-234084             ......GAUGUAGUGGC.AUUGAUG...AAGGAAUGA.GAAAGG.AAU.G
AE017269.1/77627-77808               ......AGAUUUAAUGG.GAUCUGUG..AUCAUAGGUUGAAAGG.GAC.U
AE017270.1/85304-85118               ......ACAGAGAGGUC.UAUG......AAAUUAGAU.GAAAGG.AAG.U
AE017267.1/95018-94836               ......GAUGUAGUGGC.AUUGAUG...AACGAAUGA.GAAAGG.AAU.G
AE017274.1/20257-20449               ......GAGACACAGAG.AAUGUCUUAGACUCCGUUU.GAAAGG.AAA.A
AL591976.1/186683-186486             GAA...ACAAAGACGCC.GACG......ACAAAGAAU.GAACAG.GUU.G
AL596166.1/112469-112272             GAA...ACAAAGACGCC.AAUG......ACAAAAAAC.GAACAG.GUU.A
AF306669.1/1019-1194                 ......UGUCUGCUAAC.AG.........CUAAAUUU.GAAAGG.GUG.C
AF269536.1/680-500                   CGU...AUGGGACAUGU.GUUG......A..AUAAGU.GAAAGG.UAA.U
AF270308.1/2156-2331                 CGU...AUGGGACAUGU.GUUG......A..AUAAGU.GAAAGG.UAA.U
AE016747.1/182196-182375             U.....UGUCUGCUAAC.AAUU.......AUAGAGUU.AAAAGG.GUG.A
AE007576.1/1562-1747                 ......AGUUGGCAAAC.UUAG......AUGAACGGU.AAAAGGGGCU.U
AE007856.1/5090-5262                 ......AGCUGGCAAGC.UUUG......AGGGAUAAA.GAAAGG.AAU.U
AE015937.1/285886-286061             ......GAUAAAAGCAA.GAUG......AUGUACAGU.GAAAGG.AAA.U
AE007843.1/1920-1745                 ......GAGACAAGCAC.UAUG......AAGCAGUUU.AAAAGG.AAA.U
AE015944.1/195870-195703             ......AAACUGCCAAGUAAUG......AUAGAUAGG.AAAAGG.AAU.U
AE013039.1/9145-9323                 UAAGGAGAAGAACCUCC.AAUA......CUCGCUGAA.GAA.GG.UUU.G
AE013149.1/9167-9356                 ......UGUUAAGGGCC.GAUG......AAGGUGUGU.GAAAGG.GGU.G
AE016947.1/224792-224618             ......AGUGAGAGGAC.ACUGGG....AAGCAAGUU.UA..GG.AUC.A
AL935254.1/261916-262097             ......GGGUCACCACU.UAUG......AAGGUCAGU.GAACGG.GGC.A
AE006448.1/6071-6253                 ......AGCACAACAAA.GACG......CGUAUUUAG.AGGAGG.AGA.G
AE015545.1/1265-1436                 ......AGGGUGAUGCC.GCAG......AUGUACAAG.GAAAGG.AGU.C
AE015829.1/4454-4280                 ......GCACAAACUCC.AGCG......AUGAUUGAU.GAGGGA.GAU.U
U00006.1/98763-98567                 ......GGAGCCAGUCC.UGUG......AUAACACCU.GAGGGG.GUG.C
X00008.1/296-492                     ......GGAGCCAGUCC.UGUG......AUAACACCU.GAGGGG.GUG.C
X15196.1/270-75                      ......GGAGCCAGUCC.UGUG......AUAACACCU.GAGGGG.GUG.C
AE016770.1/235405-235209             ......GGAGCCAGUCC.UGUG......AUAACACCU.GAGGGG.GUG.C
U32832.1/9495-9319                   ......GAGUGGAUAAC.GAAG......AAGAAAAAA.GAAAGG.AAU.A
AE017154.1/86844-87014               ......GAGUGGAAAGC.GAUG......AAGGGGAAG.GAAAGG.CGU.A
AE006126.1/222-48                    ......GAGUGGAUAAC.GAAG......AGGAAAAAG.GAAAGG.AGU.G
AE004193.1/5679-5861                 ......GGGGUGAUGCC.AAUG......AAUUGUGGA.AAAAGG.CGU.U
AE004361.1/7554-7382                 ......AGGUUGACCCC.GAUG......AUGACUGGU.UAAAGG.GUA.C
AE004127.1/7715-7538                 ......GCCUCAACUCC.AAUA......CAGAACAUU.CAGGGG.GAG.U
AE001799.1/20444-20268               ......AUCAGGGGAGG.AAUCG.....GGGACGGCU.GAAAGG.CGA.G
#=GC SS_cons                         .............................>>>>>>>>........>>>.>

M93419.1/332-511                     .UUCGCCGAAGUGAAGAAAAA....CUCAUU....UUUUUCUU.UGCUGG
J03294.1/2297-2476                   CGUCGCCGAAGCAAAUAAAACCCC.AUCG......GUAUUAUU.UGCUGG
Z99121.2/6040-5861                   .AGCGCCGAAGUGUGGAGAAAGCC.GAUC......CUUCUCUA.UGCUGG
AE017026.1/274819-274638             .AUUGCCGAAGUAAGUUGUGUCC..ACCA.U....GCAC.ACU.UGCUGG
AE017007.1/287994-288186             .GUUGCCGAAGUUUAUAUUUCUU..CUCU.G....GAAAUAUG.AGCUGG
AE017033.1/217118-217310             .GUUGCCGAAGUUUAUAUUUCUU..CUCU.G....GAAAUAUG.AGCUGG
AE017029.1/246029-245843             .AUUGCCGAAAUCGAUAUAUUU...CUCU.G....UAUGUAUC.GAUUGG
AE017028.1/200117-200298             .AUUGCCGAAAUAUAAGAAUAACC.AUCU......UAUUCAUA.UAUUGG
AE017003.1/180245-180059             .AUUGCCGAAAUUGAUAAAUUU...CUCU.G....CAUUUAUC.AAUUGG
AE017000.1/234265-234084             .GUUGCCGAAGUAAGUCGUGUCC..ACCA.U....GCAC.GCU.UGCUGG
AE017269.1/77627-77808               .AUUGCCGAAAUAUAAGAAUAACC.AUCU......UAUUCAUA.UAUUGG
AE017270.1/85304-85118               .AUUGCCGAAAUCGAUAUAUUU...CUCU.G....UAUGUAUC.GAUUGG
AE017267.1/95018-94836               .AUUGCCGAAGUAAGCCCGUGUCC.ACCAUG....CAC..GCU.UGCUGG
AE017274.1/20257-20449               .GUUGCCGAAGUUUAUAUUUCUU..CUCU.G....GAAAUAUG.AGCUGG
AL591976.1/186683-186486             .AUCGCCGAAGUGACUAUUUUCU..CUUU.GUUUAGAAAUAGU.UGUUGG
AL596166.1/112469-112272             .AUCGCCGAAGUGACUAUUUUUU..CUUU.GUAUCGAAAUAGU.UGUUGG
AF306669.1/1019-1194                 .GAUGCCGAAGC.AAUUAUAAU...AGCA.G....UUAUAAUU.UGUUGG
AF269536.1/680-500                   .AAUGCCGAAAUGAUGUUAUUUC..CAUA.A....AUUAGCAU.UGUGAA
AF270308.1/2156-2331                 .AAUGCCGAAAUGAUGUUAUUUC..CAUA.A....AUUAGCAU.UGUUGG
AE016747.1/182196-182375             .GAUGCCGAAAUGAUUCAUAAU...AGCA.G....UUAUGAAU.CGUUGG
AE007576.1/1562-1747                 .UUAGCCGAAGCAUUUAGAUU....GGCA......GAUUUAUU.UGCUGG
AE007856.1/5090-5262                 .GCAGCCGAAGAAGGAUUUCC....GGCA......GGAACUUU.UUCUGG
AE015937.1/285886-286061             .AUCGCCGAAGC.AUGCAGUUAAAGCUUUGA....UACUGUAU.GACUGG
AE007843.1/1920-1745                 .UUUGCCGAAGCGUAUAGCUAAUG.CUUU.A....AUGCUGUACUGCUGG
AE015944.1/195870-195703             .AUAGCCGAAGAAAAUAGGGU....GGUA......A.UCUAUU.UUCUGG
AE013039.1/9145-9323                 .GCUGCCGAAAGGGUGAGCUUG...UUCU.U....GAGCUCAU.CCUUGG
AE013149.1/9167-9356                 .CCCGCCGAAGC.GCGUAAACUUC.CUUAAG....GUUUACGC.AGCUGG
AE016947.1/224792-224618             .AUCGCCGAAAUGCAUAACGGAGC.CUCU.U....CUGUUGUG.UGUUGG
AL935254.1/261916-262097             .ACCGCCGAAAUCGAUGGAUCAGU.GACC......GAUUCAUC.CGUUGG
AE006448.1/6071-6253                 .GUUGCCGAAAGAAUUUUGUU....GCUC......AGCAAGGU.UCUUGG
AE015545.1/1265-1436                 .AGCGCCGAAGUAGCCAGGUC....AUCA......AACCGAGC.UGCUGG
AE015829.1/4454-4280                 .AGCGCCGAGGCAUAGAUGUGGU..UGCU.G....CAUGUUUA.UGUCGG
U00006.1/98763-98567                 .AUCGCCGAGGUGAUUGAACGGCU.GGCC.A....CGUUCA.U.CAUCGG
X00008.1/296-492                     .AUCGCCGAGGUGAUUGAACGGCU.GGCC.A....CGUUCA.U.CAUCGG
X15196.1/270-75                      .AUCGCCGAGGUGAUUGAACGGCU.GGCC.A....CGUUCA.U.CAUCGG
AE016770.1/235405-235209             .AUCGCCGAGGUGAUUGAACGGCU.GGCC.A....CGUUCA.U.CAUCGG
U32832.1/9495-9319                   .GUUGCCGAAAUCAAAUAAAA....GUCG......UUUUGUUU.GGUUGG
AE017154.1/86844-87014               .UUUGCCGAAAUCAAUUAAGC....GUCA......UCUUAGUU.GGUUGG
AE006126.1/222-48                    .ACCGCCGAAAUCAAUUGAAA....GUCA......UUUUGAUU.GGUUGG
AE004193.1/5679-5861                 .GCCGCCGAAGUCAACUUGCCC...AUCA.A....CGCA.GUU.GGCUGG
AE004361.1/7554-7382                 .AGCGCCGAAGUGAUCGUUGC....GUCA......UCAACGUU.CGCUGG
AE004127.1/7715-7538                 .AGUGCCGAGGUGAAUCAAAGU...UGUG.G....CUUUGGUU.UAUCGG
AE001799.1/20444-20268               .GGCGCCGAAGG.GUGCAGAGUUC.CUCCCG....CUCUGCAU.GCCUGG
#=GC SS_cons                         .>>>>>...<<<<<<<<<<<<..............>>>>>>>>.>>>><<

M93419.1/332-511                     U.CCUG.CAUU..UAAGAGAUGCCGGAUUGUCAAGGCGGUGC........
J03294.1/2297-2476                   C.CGUG.CAUU..GAAUAAAUGUAAGGCUGUCAAGAAA.UCA........
Z99121.2/6040-5861                   G.ACUG.UAUCU.GAAUAAGUGCAGGACUGCCGCGUGC.UUU........
AE017026.1/274819-274638             G.UCUG.CAUU..UAAUAAGUGCAGAACUGUCACAAACGUUU........
AE017007.1/287994-288186             G.GCUG.UCUCC.GAAA.GGAACAGAACUGUCACGUUU.ACAAAAUUACC
AE017033.1/217118-217310             G.GCUG.UGUCU.GAAA.GGAACAGAACUGUCACGUUU.ACAAAAUUACC
AE017029.1/246029-245843             G.GCUG.UUUUC.GAAUAGAAACAGAACUGUCAUAUGU.ACAGACAUG..
AE017028.1/200117-200298             G.ACUG.CAUU..GAAUAAAUGUAGUACUGUCAUAAGA.UUU........
AE017003.1/180245-180059             G.GCUG.UUUUC.GAAUAGAAACAGAACUGUCAUAUGU.ACAGACGUG..
AE017000.1/234265-234084             G.UCUG.CAUU..UAAUAAGUGCAGAACUGUCACAAACGUUU........
AE017269.1/77627-77808               G.ACUG.CAUU..GAAUAAAUGUAGUACUGUCAUAAGA.UUU........
AE017270.1/85304-85118               G.GCUG.UUUUC.GAAUAGAAACAGAACUGUCAUAUGU.ACAGACGCG..
AE017267.1/95018-94836               G.UCUG.CAUU..GAAUAAGUGCAGAACUGUCACAAACGUUU........
AE017274.1/20257-20449               G.GCUG.UCUCC.GAAA.GGAACAGAACUGUCACGUUU.ACAAAAUUACC
AL591976.1/186683-186486             G.ACAG.UUUCC.UAAA.GGGGCUGGACUGCUAUAAGAAUUUGUCGAAAU
AL596166.1/112469-112272             G.ACAG.UUUCC.UAAA.GGAGCUGGACUGCUAUAAGAAUUUGUCGAAAU
AF306669.1/1019-1194                 A.CUUUUUGGU..UAAGAGCUGAGAGUUUGUCAUUAUU.UAA........
AF269536.1/680-500                   G.UUGG.UUGAA.CAAUAAAAACAUCACAACCACGAAU.GCU........
AF270308.1/2156-2331                 G.ACAA.CUUUC.GAAUAGAAGUUGUACUGUCACU....UUA........
AE016747.1/182196-182375             A.CUUAAUGGU..UAAGAGCUAUAAGUUUGUCAUUAUU.AUU........
AE007576.1/1562-1747                 C.UUUU.CAUA..CAACAUAUGAAUGGCUGUCACUUUA.UUAGUUAGUUA
AE007856.1/5090-5262                 U.UUUG.UAUA..AAAUAUAUGCAGAACUGUCACUAUUCUUU........
AE015937.1/285886-286061             U.CUUA.UUUA..AAAUAUGAAUAAGAUUGUCACAAAA.UGA........
AE007843.1/1920-1745                 G.UUUG.UAUA..AAAUAUGUGCAAAACUGUCACAAAG.UAU........
AE015944.1/195870-195703             C.UUUG.CAUA..AAAUAUGUGUAAAGCUGUCACUUU...AA........
AE013039.1/9145-9323                 U.GGUA.AAC.A.CAAA..GUUUACCACUGUCAUGGGA.CCU........
AE013149.1/9167-9356                 G.CCUA.UGCC..GAACAGGUAUAGGACUGUCACUGAAGGCUCCCCAGGC
AE016947.1/224792-224618             G.ACGU.AAGU..UAAGAGCUUGCGGACUGUCUUAGUAGUGA........
AL935254.1/261916-262097             G.CCUU.GGUU..GAAUAAAUCAUGGACUGUCGCAGCUAGAA........
AE006448.1/6071-6253                 G.CUAG.UGAG..AAAAACUCACUAGACUGUCGCAAAUGGUUAAUA....
AE015545.1/1265-1436                 U.UUUG.CAUC..AAAUAGGUGCAAGACUGCCAUAGUC.AUC........
AE015829.1/4454-4280                 U.CGCU.UAGGCUGAAU.CCU.AACGAUUGUCACCUG..UAA........
U00006.1/98763-98567                 C.UACA.GGGGCUGAAU.CCCCUG.GGUUGUCACCAGA.AGCGUUCGCAG
X00008.1/296-492                     C.UAAG.GGGGCUGAAU.CCC.CUGGGUUGUCACCAGA.AGCGUUCGCAG
X15196.1/270-75                      C.UACA.GGGGCUGAAU.CCCCUG.GGUUGUCACCAGA.AGCGUUCGCAG
AE016770.1/235405-235209             CUACAG.GGGC..UAAA.UCCCCUGGGUUGUCACCAGA.AGCGUUCGCAG
U32832.1/9495-9319                   U.GGCG.UGCUC.GAAA.GGGGCGACACUGUCAUAGUU.UUUCUGAU...
AE017154.1/86844-87014               G.GUCG.UUGCC.GAAA.GGGACGACACUGUCGUAAUUCAAU........
AE006126.1/222-48                    U.GGCG.UAUUC.GAAA.GGAACGUCAUUGUCAUAGUC.UUUUUU.....
AE004193.1/5679-5861                 G.GUUA.CAUU..CAAUAGGUGUAACACUGCCAUAGUC.UAUAUUGUUGU
AE004361.1/7554-7382                 G.CCAG.CAUU..GAACAAAUGCCGGACUGCCAUAGUG.UGU........
AE004127.1/7715-7538                 U.UGAA.CGGGCUGAAU.CCC.UUCAACUGUCAUCAGCUCGA........
AE001799.1/20444-20268               G.GGUA.UGGG..GAAUACCCAUACCACUGUCACGGAGGUCU........
#=GC SS_cons                         <.<<<<.<<<<.......>>>>>>>>>>>.<<<<<<<.............

M93419.1/332-511                     ..............CGCCUUGG.AGAGCUAUCUCACUG
J03294.1/2297-2476                   .............UUUUCUUGG.AGGGCUAUCUCGUUG
Z99121.2/6040-5861                   ...............UUCGCGG.AGGGCUAUCCGGAGA
AE017026.1/274819-274638             .............CGUUUGUGG.AGAGCUAUCGAGAGG
AE017007.1/287994-288186             GUG..........UAAACGUGG.GGUGCUAUCUUAACG
AE017033.1/217118-217310             GUG..........UAAACGUGG.GGUGCUAUCUUAACG
AE017029.1/246029-245843             .............UACGUAUGA.AGAGCUAUCUACAAA
AE017028.1/200117-200298             .............AUUUUAUGG.AGAGCUAUUUGGAGA
AE017003.1/180245-180059             .............UACGUAUGA.AGAGCUAUCUACAAA
AE017000.1/234265-234084             .............CGUUUGUGG.AGAGCUAUCGAGAGG
AE017269.1/77627-77808               .............AUUUUAUGG.AGAGCUAUUUGGAGA
AE017270.1/85304-85118               .............UAUGUAUGA.AGAGCUAUCUACAAA
AE017267.1/95018-94836               .............CGUUUGUGG.AGAGCUAUCGAGAGG
AE017274.1/20257-20449               GUG..........UAAACGUGG.GGUGCUAUCUUAACG
AL591976.1/186683-186486             .............UUCUUAUAGGUGUGCUAUCUGACAA
AL596166.1/112469-112272             .............UUCUUAUAGGUGUGCUAUCUGACAA
AF306669.1/1019-1194                 .............AAAUAAUGG.AGUGCAUCACUUGUA
AF269536.1/680-500                   ...............UUCUUCA.AUAUUUAUUUGAAUU
AF270308.1/2156-2331                 .................UGUGA.UGUGCUACCUUAUAU
AE016747.1/182196-182375             .............AAAUAAUGG.AGUGCAUCACUUGUA
AE007576.1/1562-1747                 UUA..........GGUAAGUGG.AGCGCUACAAGGUAC
AE007856.1/5090-5262                 ..............UAUAGUGG.AGAGCUACAAGGUGC
AE015937.1/285886-286061             ..............AUUUGUGG.AGAGCUAUCAUUCAA
AE007843.1/1920-1745                 ..............AAUUGUGG.AGAACUAUCAUUGGU
AE015944.1/195870-195703             ...............AAAGUGU.UGAGCUACAGAGGUC
AE013039.1/9145-9323                 ...............CCCAUGA.AGCGCUAUUUAUGCA
AE013149.1/9167-9356                 .............CUUCAGUGG.AGAGCUAUCUCGCUA
AE016947.1/224792-224618             ..............UGCUAAGU.UGUGCUAUGUUUCGU
AL935254.1/261916-262097             .............UAGUUGCGG.GGCGCUAUCGACGAU
AE006448.1/6071-6253                 .............ACCAUGCGG.AGGGCUAUUCGUUCA
AE015545.1/1265-1436                 ..............CACUAUGG.AGCGCUACCUGAAGG
AE015829.1/4454-4280                 ...............UUGGUGG.AGAGCUUCUGGUGAC
U00006.1/98763-98567                 UCGGGCGUUUCGCAAGUGGUGG.AGCACUUCUGGGUGA
X00008.1/296-492                     UCGGGCGUUUCGCAAGUGGUGG.AGCACUUCUGGGUGA
X15196.1/270-75                      UCGGGCGUUUCGCAAGUGGUGG.AGCACUUCUGGGUGA
AE016770.1/235405-235209             UCGGGCGUUUCGCAAGUGGUGG.AGCACUUCUGGGUGA
U32832.1/9495-9319                   .............UAACUAUGG.AGUGCUACGGUUGUU
AE017154.1/86844-87014               ...............AUUACGG.AGUGCUACUAUUAGG
AE006126.1/222-48                    .............AAACUAUGG.AGCGCUACUGGUUGG
AE004193.1/5679-5861                 U............AAACUAUGG.AGCGCUACUGUAGGG
AE004361.1/7554-7382                 .............UGUCUAUGG.AGCGCUACCUUGAAG
AE004127.1/7715-7538                 .............AUCUGAUGA.AGAGCUUCUGAGGGA
AE001799.1/20444-20268               ..............CUCCGUGG.AGAGCCGAUCGGGUC
#=GC SS_cons                         ...............>>>>>>>.....>>>>>>.....
//

Department of Computer Science and Information Engineering, National Central University, Tao-yuan, Taiwan
Contact with site administrator:
Tzu-Hao Chang