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► The RNALogo of RF00251 family:
 

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See detail values
See the detail description of RF00251 in Rfam
 

► The SequenceLogo of RF00251 family:

► Reset display of RNALogo of RF00251 family:
 Family sequences selection : Seed ( 7 seqs.) Full ( 31 seqs.)
 Output image format :  
 Output image size :   x pixel

 


► The sequences in RF00251 family:
# STOCKHOLM 1.0

#=GF AC   RF00251
#=GF ID   mir-219
#=GF DE   mir-219 microRNA precursor family
#=GF AU   Griffiths-Jones SR, Daub J
#=GF SE   Griffiths-Jones SR
#=GF SS   Predicted; PFOLD
#=GF GA   30.00
#=GF TC   42.47
#=GF NC   19.93
#=GF TP   Gene; miRNA;
#=GF BM   cmbuild CM SEED
#=GF BM   cmsearch -W 120 CM SEQDB
#=GF DR   MIPF; MIPF0000044;
#=GF RN   [1]
#=GF RM   12624257
#=GF RT   Vertebrate microRNA genes.
#=GF RA   Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
#=GF RL   Science 2003;299:1540.
#=GF RN   [2]
#=GF RM   12844358
#=GF RT   Computational identification of Drosophila microRNA genes.
#=GF RA   Lai EC, Tomancak P, Williams RW, Rubin GM;
#=GF RL   Genome Biol 2003;4:R42.
#=GF CC   miR-219 was predicted in vertebrates by conservation between
#=GF CC   human, mouse and Fugu and cloned in Fugu [1], and later predicted
#=GF CC   and experimentally confirmed in Drosophila [2]. miR-219 homologs
#=GF CC   have since been predicted or experimentally confirmed in a wide
#=GF CC   range of species which include the platyhelminth Schmidtea
#=GF CC   mediterranea, several arthropod species and a wide range of
#=GF CC   vertebrates (MIPF:MIPF0000044).  The hairpin precursors (represented
#=GF CC   here) are predicted based on base pairing and cross-species
#=GF CC   conservation -- their extents are not known.  In this case the
#=GF CC   mature sequence is excised from the 5' arm of the hairpin.
#=GF SQ   31

AE003524.5/253599-253667              GCUA.UGAUUGUCCAAACGCAAUUCU....UG.U.UGAUAUUC..AAUAU
AC009374.7/15584-15516                GCUA.UGAUUGUCCAAACGCAAUUCU....UG.U.UGAUAUUC..AAUAU
AB183488.1/69886-69959                GGAGUUGAUUGUCCAAACGCAAUUCU....UG.UGUCUACUAAUGUGAAA
BA000027.2/46789-46862                GGAGUUGAUUGUCCAAACGCAAUUCU....UG.UGUCUAGUAAUGUGAAA
AJ506968.1/8189-8258                  GGUGUUGAUUGUCCAAACGCAAUUCU....UG.UGUGACUCCG....CGU
BX511164.11/54911-54843               GGUGCUGAUUGUCCAAACGCAAUUCU....UG.UGCUUGUGUG.....AA
BX001023.12/144726-144651             GCAGUUGAUUGUCCAAACGCAAUUCUUGU.GA.AAUGUCGAGC..GAUCA
BX323065.6/59875-59802                GAGAUUGAUUGUCCAAACGCAAUUCU....UGUAACAUAUAAU..AUAAA
BX088597.18/18564-18639               GCAGUUGAUUGUCCAAACGCAAUUCUUGU.GA.AAUGUCGAGC..GAUCA
AL928926.9/24183-24111                GCCACUGAUUGUCCAAACGCAAUUCUUGUACG.AGUCUGCGGC....CAA
AF100956.1/111730-111659              GCUCCUGAUUGUCCAAACGCAAUUCU....CG.AGUCUCUGGC..UCCGG
BX883042.1/231502-231431              GCUCCUGAUUGUCCAAACGCAAUUCU....CG.AGUCUCUGGC..UCCGG
AC148707.1/24461-24532                GCUCCUGAUUGUCCAAACGCAAUUCU....CG.AGUCUAUGGC..UCUGG
AY866243.1/430-501                    GCUCCUGAUUGUCCAAACGCAAUUCU....CG.AGUCUAUGGC..UCUGG
AJ421778.1/62949-62878                GCUCCUGAUUGUCCAAACGCAAUUCU....CG.AGUCUAUGGC..UCUGG
AC148674.1/117022-117093              GCUCCUGAUUGUCCAAACGCAAUUCU....CG.AGUCUAUGGC..UCUGG
AY866244.1/138-209                    GCUCCUGAUUGUCCAAACGCAAUUCU....CG.AGUCUAUGGC..UCCGG
CR759786.5/6573-6644                  GCUCCUGAUUGUCCAAACGCAAUUCU....CG.AGUCUAUGGC..UCCGG
CR759733.4/80140-80211                GCUCCUGAUUGUCCAAACGCAAUUCU....CG.AGUCUAUGGC..UCCGG
AL713971.7/3501-3572                  GCUCCUGAUUGUCCAAACGCAAUUCU....CG.AGUCUAUGGC..UCCGG
AL031228.1/78378-78307                GCUCCUGAUUGUCCAAACGCAAUUCU....CG.AGUCUAUGGC..UCCGG
AC006312.8/52160-52233                GCCACUGAUUGUCCAAACGCAAUUCUUGUACG.AGUCUGCGGC....CAA
CR847841.4/5961-6032                  GCUCCUGAUUGUCCAAACGCAAUUCU....CG.AGUCUAUGGC..UCCGG
AL645940.4/92887-92958                GCUCCUGAUUGUCCAAACGCAAUUCU....CG.AGUCUAUGGC..UCCGG
D84401.1/35519-35448                  GCUCCUGAUUGUCCAAACGCAAUUCU....CG.AGUCUAUGGC..UCCGG
AL359091.10/91897-91824               GCCACUGAUUGUCCAAACGCAAUUCUUGUACG.AGUCUGCGGC....CAA
AL844527.6/36311-36382                GCUCCUGAUUGUCCAAACGCAAUUCU....CG.AGUCUAUGGC..UCCGG
AY866245.1/430-501                    GCUCCUGAUUGUCCAAACGCAAUUCU....CG.AGUCUAUGGC..CCCGG
AJ630366.1/42166-42237                GCUCUUGAUUGUCCAAACGCAAUUCU....CG.AGUCUCUGGC..UCUGG
AY152826.1/42824-42753                GCUCUUGAUUGUCCAAACGCAAUUCU....CG.AGUCUAUGGC..UCCGG
BX640585.2/63223-63152                GCUCUUGAUUGUCCAAACGCAAUUCU....CG.AGUCUAUAGC..UCUGG
#=GC SS_cons                          .........<<<<<<..<<<<<<<<<....<<..................
#=GC RF                               GCuacUGAUuGuCCaAACgCaauuCu....cG.AGUaUacggc..uccaa

AE003524.5/253599-253667              U.CA.AGGGUUGCGACUGGGCAUCGCG.GCU
AC009374.7/15584-15516                U.CA.AGGGUUGCGACUGGGCAUCGCG.GCU
AB183488.1/69886-69959                C.CA.GGAGUUGUGGAUGGACAUCACGCCCC
BA000027.2/46789-46862                C.CA.GGAGUUGUGGAUGGACAUCACGCCCC
AJ506968.1/8189-8258                  C.CA.GGAGUUGUGGAUGGACAUCAUGCCCC
BX511164.11/54911-54843               A.CA.GGAGUUGUGGAUGGACAUCACGCUCC
BX001023.12/144726-144651             G.UCGAGAAUUGUGCCUGGACAUCUGUUGCU
BX323065.6/59875-59802                UCCA.AGAAUUGUGCCUGGACAUCUGUUGCU
BX088597.18/18564-18639               G.UCGAGAAUUGUGCCUGGACAUCUGUUGCU
AL928926.9/24183-24111                C.CG.AGAAUUGUGGCUGGACAUCU.GUGGU
AF100956.1/111730-111659              C.CG.AGAGUUGCGUCUGGACGUCCCGAGCC
BX883042.1/231502-231431              C.CG.AGAGUUGCGUCUGGACGUCCCGAGCC
AC148707.1/24461-24532                C.CG.AGAGUUGAGUCUGGACGUCCCGAGCC
AY866243.1/430-501                    C.CG.AGAGUUGAGUCUGGACGUCCCGAGCC
AJ421778.1/62949-62878                C.CG.AGAGUUGAGUCUGGACGUCCCGAGCC
AC148674.1/117022-117093              C.CG.AGAGUUGAGUCUGGACGUCCCGAGCC
AY866244.1/138-209                    C.CG.AGAGUUGAGUCUGGACGUCCCGAGCC
CR759786.5/6573-6644                  C.CG.AGAGUUGAGUCUGGACGUCCCGAGCC
CR759733.4/80140-80211                C.CG.AGAGUUGAGUCUGGACGUCCCGAGCC
AL713971.7/3501-3572                  C.CG.AGAGUUGAGUCUGGACGUCCCGAGCC
AL031228.1/78378-78307                C.CG.AGAGUUGAGUCUGGACGUCCCGAGCC
AC006312.8/52160-52233                C.CG.AGAAUUGUGGCUGGACAUCUGUGGCU
CR847841.4/5961-6032                  C.CG.AGAGUUGAGUCUGGACGUCCCGAGCC
AL645940.4/92887-92958                C.CG.AGAGUUGAGUCUGGACGUCCCGAGCC
D84401.1/35519-35448                  C.CG.AGAGUUGAGUCUGGACGUCCCGAGCC
AL359091.10/91897-91824               C.CG.AGAAUUGUGGCUGGACAUCUGUGGCU
AL844527.6/36311-36382                C.CG.AGAGUUGAGUCUGGACGUCCCGAGCC
AY866245.1/430-501                    C.CG.AGAGUUGAGUCUGGACGUCCCGAGCC
AJ630366.1/42166-42237                C.CG.AGAGUUGAGUCUGGACGUCCCGAGCC
AY152826.1/42824-42753                C.CG.AGAGUUGAGUCUGGACGUCCCGAGCC
BX640585.2/63223-63152                C.CG.AGAGUUGAGUCUGGACGUCCCGAGCC
#=GC SS_cons                          ..>>.>>>>>>>>>..>>>>>>.........
#=GC RF                               c.Cg.aGaauuGcGaCuGGaCaUCucGaGcu
//

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Tzu-Hao Chang