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► The RNALogo of RF00521 family:
 


See detail values
See the detail description of RF00521 in Rfam
 

► The SequenceLogo of RF00521 family:

► Reset display of RNALogo of RF00521 family:
 Family sequences selection : Seed ( 12 seqs.) Full ( 32 seqs.)
 Output image format :  
 Output image size :   x pixel

 


► The sequences in RF00521 family:
# STOCKHOLM 1.0

#=GF AC   RF00521
#=GF ID   SAM_alpha
#=GF DE   SAM riboswitch (alpha-proteobacteria) 
#=GF AU   Barrick JE, Corbino KA, Breaker RR
#=GF SE   Barrick JE 
#=GF SS   Predicted; Barrick JE
#=GF GA   25.00
#=GF TC   26.67
#=GF NC   22.05
#=GF TP   Cis-reg; riboswitch;
#=GF BM   cmbuild CM SEED
#=GF BM   cmsearch -W 120 CM SEQDB
#=GF CC   This family is a riboswitch found predominantly in
#=GF CC   alpha-proteobacteria that binds S-adenosyl methionine (SAM). Its
#=GF CC   structure and sequence appear to be unrelated to the SAM
#=GF CC   riboswitch Rfam:RF00162 found in Gram-positive bacteria.  This
#=GF CC   SAM riboswitch is located upstream of the metA and metC genes in
#=GF CC   Agrobacterium tumefaciens, and other methionine and SAM
#=GF CC   biosynthesis genes in other alpha-proteobacteria.  Like the other
#=GF CC   SAM riboswitch, it probably functions to turn off expression of
#=GF CC   these genes in response to elevated SAM levels.
#=GF SQ   12

AE016939.1/185087-185161             AAAUGAAAGUGUGG.ACAGAUUU.....GAGCAGCUUGCAA.CCACG..G
AE017178.1/181977-182051             ACCAAUCAGCGUGG.AAGGAUUUGU....AAU.GCUUGCAA.CCACG..A
BX572608.1/148770-148849             GACUUAUCCCGUGGU...GAUUUGAGCCGGCCGGCUUGCA.GCCACG..U
BX572607.1/122628-122549             ACCAGAACUCGUGGU...CAUUUGAGCCGGCCGGCUUGCA.GCCACG..U
AE009014.1/2000-1922                 AGCUUAUCCCGUGGU...GAUUUGGCC.GGUCGGCUUGCA.GCCACG..U
AE009218.1/2655-2731                 AAACGCCUCAGUGGU...GAUUUGCC..GACCGGCUUGCA.GCCACU..U
AJ012295.1/100-178                   GAAUUAUCCCGUGGU...GAUUUGGCC.GGUCGGCUUGCA.GCCACG..U
AL591793.1/81416-81493               CAAAUGAUCCGUGGU...GAUUUGGCC.GGCCGGCUUGCA.GCCACG..U
AL591784.1/13589-13510               GCUUUAUCCCGUGGU...GAUUUGGCC.GGUCGGCUUGCA.GCCACG..U
BX640450.1/326747-326668             ACAUUGUUCGGCGCC...GAUUUGCCU.GAUCCGCUUGCG.GGCGCCUCU
BX640435.1/245612-245533             ACAUUGUUCGGCGCC...GAUUUGCCU.GAUCCGCUUGCG.GGCGCCUCU
AE016915.1/202896-202819             UAAUGUUCAUGCGCC...GAUUUGA....CACAGCUUGCG.GGCGCU..C
#=GC SS_cons                         .........<<<<<<..........................>>>>>>...

AE016939.1/185087-185161             AAAAAAAU...GCUAAAACACGUC..UUGUUGACGCCUU
AE017178.1/181977-182051             GAAAAAAU...GCUAAAAC.AUUU.CUUCUUAGAAAGCU
BX572608.1/148770-148849             UAAACAAGUC.GCUAAACA.GGCC.GGGGACGUUGUGGU
BX572607.1/122628-122549             UAAACAACUC.GCUAAACA.GGCC.GGGGACAGUUCCGA
AE009014.1/2000-1922                 UAAACAAGUG.GCUAAAAA.GACC.GGGUGCUAGGAACC
AE009218.1/2655-2731                 UAAAGAAGUC.GCUAAAG..GGUC.GAGGAAAAGGGCAA
AJ012295.1/100-178                   UAAACAAGUG.GCUAAAAA.GACC.GGGUUGAAACCGGU
AL591793.1/81416-81493               UAAAGAAGUC.GCUAAAG..GGCC.GAGGGAACAAUGGA
AL591784.1/13589-13510               UAAACAAGUA.GCUAAAAA.GGCCGGGUGUCAAACCGGU
BX640450.1/326747-326668             UAUAAAUCCA.GCUAAAGA.GGUC..UGAAUGACCAAUC
BX640435.1/245612-245533             UAUAAAUCCA.GCUAAAGA.GGUC..UGAAUGACCAGUC
AE016915.1/202896-202819             GAUAAAUGCCAGCUAAAGC.GUAUCCGGAUCAACCCGCU
#=GC SS_cons                         .......................................
//

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