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► The RNALogo of RF00522 family:
 


See detail values
See the detail description of RF00522 in Rfam
 

► The SequenceLogo of RF00522 family:

► Reset display of RNALogo of RF00522 family:
 Family sequences selection : Seed ( 22 seqs.) Full ( 63 seqs.)
 Output image format :  
 Output image size :   x pixel

 


► The sequences in RF00522 family:
# STOCKHOLM 1.0

#=GF AC   RF00522
#=GF ID   PreQ1
#=GF DE   PreQ1 riboswitch 
#=GF AU   Barrick JE, Breaker RR
#=GF SE   Barrick JE 
#=GF SS   Predicted; Barrick JE
#=GF GA   25.00
#=GF TC   25.59
#=GF NC   24.35
#=GF TP   Cis-reg; riboswitch;
#=GF BM   cmbuild CM SEED
#=GF BM   cmsearch -W 100 CM SEQDB
#=GF RN   [1]
#=GF RM   14660578
#=GF RT   Identification of four genes necessary for biosynthesis of the
#=GF RT   modified nucleoside queuosine.
#=GF RA   Reader JS, Metzgar D, Schimmel P, de Crecy-Lagard V;
#=GF RL   J Biol Chem 2004;279:6280-6285.
#=GF CC   This family is a bacterial riboswitch that binds to the
#=GF CC   metabolite preQ1, an intermediate in the biosynthesis of the
#=GF CC   modified nucleoside queuosine from GTP. One example of this
#=GF CC   riboswitch is located in the leader of the Bacillus subtilis
#=GF CC   ykvJKLM (queCDEF) operon which encodes four genes necessary for
#=GF CC   queuosine production [1]. PreQ1 binding to the riboswitch aptamer
#=GF CC   is thought to induce premature transcription termination within
#=GF CC   the leader to down-regulate expression of these genes.
#=GF SQ   22

AF022216.1/537-579                     GGGUAAGAGGUU.CUAG...CU.ACCCUCU....................
AF022216.1/477-519                     GGCGAAGAGGUU.CUAG...CU.ACCCUCU....................
Z99111.2/27640-27684                   GCGGGAGAGGUUCUAGC..UAC.ACCCUCU....................
AE017002.1/104803-104846               GCGGGAGAGGUUCGCGA..AC..UCCCUCU....................
AE017355.1/1321429-1321472             ACGGGAGAGGUUCGCGA..AC..UCCCUCU....................
AE017355.1/1568663-1568707             AAUAACGUGGUUCGAA...ACCAUCCCACG....................
AL596166.1/191853-191900               CCACACGUGGUUCAUUCAUACCAUCCCACG....................
AE016745.1/177077-177031               AUAACAGAGGUUCCUAGCC.GAAACCCUCU....................
BX571857.1/755298-755252               AUAUCAGAGGUUCCUAGCU.GAAACCCUCU....................
AF269583.1/2263-2307                   AUUUUGGCGGUUUCUAA..AC..ACCCGCU....................
AE007742.1/1685-1638                   UUUAAGACAGUUCGAA...ACCAUCCUGUC..................UA
AE015944.1/68502-68549                 AUAUGGACAGUUCGUA...ACCAUCCUGUC..................CC
AE007858.1/3716-3764                   AAUAAGACAGUUCGCAA..UCCAUCCUGUC..................UA
AE016955.1/69789-69833                 CUCGGACUGGUUCGGAA..ACU.UCCCAGA....................
AE016955.1/136369-136324               GUAACCAAGGUUCAUCA..ACCAUCCCUUG....................
AL935260.1/111560-111516               GCUGGCCUGGUUCGUAA..ACU.UCCCAGG....................
X99978.2/10136-10181                   CAAUACGUGGUUCGUA...ACCAUCCCACG....................
AL766846.1/39196-39152                 CUCGGACUGGUUCGAAA..ACU.UCCCAGA....................
AL162758.2/126661-126705               CGCCCCGUGGUUCGAAA..ACC.UCCCACA....................
AL162754.2/2823-2868                   AACUUCGCGGUUCGAAA..ACC.UCCCGCG....................
U32798.1/8833-8789                     CCCCCCGUAGUUCGCAA..ACC.UCCUACA....................
AE006052.1/10631-10566                 UUCAUAGUGGUUCGUA...ACCCUCCCACUUGAACAACCAACAAUUGUUC
#=GC SS_cons                           .....<<<<<...............>>>>>....................

AF022216.1/537-579                     .CAAAAAAACUAAGGAGAA
AF022216.1/477-519                     .CAAAAAAACUAAGGAGAA
Z99111.2/27640-27684                   .AUAAAAAACUAAGGACGA
AE017002.1/104803-104846               .AUAAAAAACUAUGGAAAC
AE017355.1/1321429-1321472             .AUAAAAAACUAUGGAAAC
AE017355.1/1568663-1568707             .UAAAAAAACUAAGGAGAU
AL596166.1/191853-191900               .UAAAAAAACUAGGAGGAA
AE016745.1/177077-177031               .AUAAAAAACUAGACAUGA
BX571857.1/755298-755252               .AUAAAAAACUAGACAUUG
AF269583.1/2263-2307                   UUAACAAAAUUUAGGAGGA
AE007742.1/1685-1638                   UAAAUAAAACUAUGGAGGU
AE015944.1/68502-68549                 UAAAUAAAACUAUGGAGGU
AE007858.1/3716-3764                   UAAACAAAACCAGGGCAAU
AE016955.1/69789-69833                 .AUAAAAAACUAAGUAUCU
AE016955.1/136369-136324               .UAAAAAAACUCGGAGAAA
AL935260.1/111560-111516               .AUAAAAAACCAAGAACUU
X99978.2/10136-10181                   UUAAAAAAACUAGGAGGAA
AL766846.1/39196-39152                 .AUAAAAAACUAAGUGACU
AL162758.2/126661-126705               .CUAAAAAACUAAGGAAAC
AL162754.2/2823-2868                   UCACCAAAACUAGGAUUCG
U32798.1/8833-8789                     .AUAAAAAACUAGGUAAAA
AE006052.1/10631-10566                 GAAACAAAACUAGGAAAAU
#=GC SS_cons                           ...................
//

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